PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001206G0160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 420aa    MW: 45228.3 Da    PI: 8.5839
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001206G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91.1e-1275131155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  PH01001206G0160  75 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 131
                      78*******************77776664346655.77******************98 PP

2AP252.89.6e-17174225155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +s    +k  +lg+fgt eeAa+a++ a+ k++g
  PH01001206G0160 174 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 225
                      57****************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1475140IPR016177DNA-binding domain
PfamPF008476.3E-1075131IPR001471AP2/ERF domain
CDDcd000181.67E-1775139No hitNo description
Gene3DG3DSA:3.30.730.107.5E-1376140IPR001471AP2/ERF domain
PROSITE profilePS5103217.35976139IPR001471AP2/ERF domain
SMARTSM003808.3E-2376145IPR001471AP2/ERF domain
PRINTSPR003671.8E-67788IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-18174234IPR016177DNA-binding domain
CDDcd000183.31E-24174235No hitNo description
PfamPF008475.0E-12174225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18175233IPR001471AP2/ERF domain
SMARTSM003801.5E-33175239IPR001471AP2/ERF domain
PROSITE profilePS5103218.927175233IPR001471AP2/ERF domain
PRINTSPR003671.8E-6215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPSHSAGHLH PLTLSMSSGS QSSCVTMQSA AAHAGSGSEY VAMDGICKKR GTDRGGQSKQ  60
PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR  120
AYDLAALKYW GPSTHINFPL EDYQEELEDM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT  180
RHHQHGRWQA RIGRVSGNKD LYLGTFGTQE EAAEAYDVAA IKFRGLNAVT NFDITRYDVD  240
KIMASNTLLP GELVRRKKDN DAAAEITEST AVANAAAALV QAGSATDWKV ATALPSARTA  300
TPCSDEHSHH HDLLSSEAFS VLHDIVSVDA VTAGADADSA QGNASAHMSN TSSLATSLSN  360
SLEQSPDRGG GLAMLFAKPA ASKLASSLPL GSWVSPSPVP TRPGVSIAHM PLFAAWTDL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-171AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981612.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X4
SwissprotQ389141e-139ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0E0KJJ00.0A0A0E0KJJ0_ORYPU; Uncharacterized protein
STRINGSi034505m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-132AP2 family protein